PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 396aa    MW: 42380.4 Da    PI: 7.7492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26194genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50281561128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 
               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++  ++e+
  EMT26194  28 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASgcGREK 127
               79****************************.89***************988899****************************************9999999 PP

       NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
               vg+kk Lvfy+g+ pkg kt+ +m+eyrl
  EMT26194 128 VGVKKALVFYRGKPPKGLKTNGIMQEYRL 156
               ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-6025193IPR003441NAC domain
PROSITE profilePS5100558.14428193IPR003441NAC domain
PfamPF023656.4E-2429156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGSSDSSSGS APPRHQPPPP QQGSAPELPP GFRFHPTDEE LVVHYLKKKA AKVPLPVTII  60
AEVDLYKFDP WELPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPIMA  120
SGCGREKVGV KKALVFYRGK PPKGLKTNGI MQEYRLTDAS SSATTSRPPP VTGGSRAASL  180
RLDDWVLCRI YKKINKAAAG DQQRSMECED SVEDAVTAYP PYATAGMTGA GAHGSNYDSL  240
LHHQDSHEDN FLDGLLTAED AGLSAGATSL SHLAAAARAS PAPTKQFLAP SSSTPFNWLD  300
ASTVGILPQA RNFPGFNRSR NVGNMSLSST ADMAVDNGGG NAINAMPPFM NHLPVQDGTY  360
HQQHVILGAP LAPEATAAAT SAFQHPVQIS GVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-702819717169NAC domain-containing protein 19
4dul_A1e-702819717169NAC domain-containing protein 19
1ut7_B1e-702819717169NO APICAL MERISTEM PROTEIN
1ut7_A1e-702819717169NO APICAL MERISTEM PROTEIN
1ut4_B1e-702819717169NO APICAL MERISTEM PROTEIN
1ut4_A1e-702819717169NO APICAL MERISTEM PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8208900.0KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562891.10.0PREDICTED: NAC transcription factor NAM-B2-like
SwissprotA0SPJ60.0NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLM8BW640.0M8BW64_AEGTA; NAC domain-containing protein 18
STRINGBRADI1G24390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-90NAC domain containing protein 25